rs29800313 SNP Detail

Summary

• ID
  rs29800313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCACCAC AAGGCCAAGG
  GGAAGTAATC TGGCGATTGT CTGTACTGCC CAGTTGAAAG TTAACCAAAA CAAAGGCTCT
  TTTCAGAGCC ACCCACATCT TTCCATAAAA TGAGCTGCCA CCTCGTGAAA CGTTCTTCCA
  CTACAGTTTT TATACTACAT ATGAAAAAGT TACGAAGTAG CTTTCAATCT TAGTAAATTG
  R
  TTTTAATACT GTTAGTCCCT GCGATAAATC TTACGACCTT CCTTAGTTTG AGTCAAAAGT
  GTGTAAGAGA TGAAACCTTT AGAACATACT ATATAAATTT TTAGTAGAAA TTTGGCACCC
  AGGTTTGTCA TTCACGTCAC GATTGTCTAG AGCATAATGG TAGTAAGGGC TAAGGGCCAT
  TAAATCCCAC TTCCATAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383675	NES11348014	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	G		G	G	A		A
ss324291411	CHEV_13_23843567	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29800313					SNP	A	A	A	G	A	G	A	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383675	NES11348014	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	42 bp distal
Gm54518	predicted gene, 54518	183 bp upstream
H2ac4	H2A clustered histone 4	100 bp downstream
H3c2	H3 clustered histone 2	647 bp upstream
Rr403663	regulatory region 403663	558 bp downstream
Rr403664	regulatory region 403664	387 bp upstream
Rr475938	regulatory region 475938	562 bp distal
Rr475939	regulatory region 475939	305 bp distal
Rr475940	regulatory region 475940	68 bp distal
Rr475941	regulatory region 475941	79 bp proximal
Rr475942	regulatory region 475942	1971 bp proximal
Tssr118860	transcription start site region 118860	612 bp downstream
Tssr118861	transcription start site region 118861	580 bp downstream
Tssr118862	transcription start site region 118862	491 bp downstream
Tssr118863	transcription start site region 118863	643 bp upstream
Tssr121747	transcription start site region 121747	497 bp downstream