rs29800350 SNP Detail

Summary

• ID
  rs29800350
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGACGATTG CTTCTCGTAC TTTCGGTTTG TTTGCCACAG CGATGGAGTT
  K
  TGGGTTGAAC TGCGTCACAA CCTTTTGTCA GCCATTTTTT TTTCAAGTTT           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383471	NES11348872	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	T		T	G		G
ss324291276	CHEV_13_23831952	CHEVERUD	SCREENING_POP	f	SNP										G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29800350					SNP	G	G	G	G	T	G	G	G	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383471	NES11348872	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	21 bp distal
H1f2	H1.2 linker histone, cluster member	mRNA-UTR
Rr369656	regulatory region 369656	within coordinates
Rr388130	regulatory region 388130	1573 bp upstream
Rr475930	regulatory region 475930	1265 bp distal
Rr475931	regulatory region 475931	897 bp distal
Rr475932	regulatory region 475932	1728 bp proximal
Tssr118854	transcription start site region 118854	1274 bp downstream
Tssr118855	transcription start site region 118855	885 bp downstream
Tssr118856	transcription start site region 118856	148 bp downstream
Tssr118857	transcription start site region 118857	43 bp upstream