rs29800758 SNP Detail

Summary

• ID
  rs29800758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG ATGCCCTGGA TGTTATCGCG
  R
  AGAACCTTAC GGTGGCGCTT AGCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47383870	NES11347441	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29800758					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383870	NES11347441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Gm61378	predicted gene, 61378	359 bp upstream
Gm61381	predicted gene, 61381	1502 bp downstream
H3c1	H3 clustered histone 1	796 bp downstream
H4c1	H4 clustered histone 1	within coordinates
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	131 bp proximal
Rr475946	regulatory region 475946	1287 bp proximal
Tssr121749	transcription start site region 121749	78 bp downstream
Tssr121750	transcription start site region 121750	120 bp downstream
Tssr121751	transcription start site region 121751	134 bp downstream
Tssr121752	transcription start site region 121752	1273 bp downstream
Tssr121753	transcription start site region 121753	1289 bp downstream