rs29801329 SNP Detail

Summary

• ID
  rs29801329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTACAG TTTTTATACT
  ACATATGAAA AAGTTACGAA GTAGCTTTCA ATCTTAGTAA ATTGATTTTA ATACTGTTAG
  TCCCTGCGAT AAATCTTACG ACCTTCCTTA GTTTGAGTCA AAAGTGTGTA AGAGATGAAA
  CCTTTAGAAC ATACTATATA AATTTTTAGT AGAAATTTGG CACCCAGGTT TGTCATTCAC
  R
  TCACGATTGT CTAGAGCATA ATGGTAGTAA GGGCTAAGGG CCATTAAATC CCACTTCCAT
  AGTTTCGGCA GTATTTTAAC TAACATGATC TGCCTGTGTG TATCGGTTTG CAAATATTTG
  ATTTTAGAAT TGATAAACTA CATTTATTTA AACTAGGTCT TGCAAAGCTC ACAAAACCTA
  CTTTAAATTT CTATGTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47383681	NES11348019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29801329					SNP	G	G	G	G	A	G	A	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383681	NES11348019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	178 bp distal
Gm54518	predicted gene, 54518	319 bp upstream
H2ac4	H2A clustered histone 4	236 bp downstream
H3c2	H3 clustered histone 2	511 bp upstream
Rr403663	regulatory region 403663	694 bp downstream
Rr403664	regulatory region 403664	251 bp upstream
Rr475938	regulatory region 475938	698 bp distal
Rr475939	regulatory region 475939	441 bp distal
Rr475940	regulatory region 475940	204 bp distal
Rr475941	regulatory region 475941	within coordinates
Rr475942	regulatory region 475942	1835 bp proximal
Tssr118860	transcription start site region 118860	748 bp downstream
Tssr118861	transcription start site region 118861	716 bp downstream
Tssr118862	transcription start site region 118862	627 bp downstream
Tssr118863	transcription start site region 118863	507 bp upstream
Tssr121747	transcription start site region 121747	361 bp downstream