rs29801332 SNP Detail

Summary

• ID
  rs29801332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATACTG TTAGTCCCTG
  CGATAAATCT TACGACCTTC CTTAGTTTGA GTCAAAAGTG TGTAAGAGAT GAAACCTTTA
  GAACATACTA TATAAATTTT TAGTAGAAAT TTGGCACCCA GGTTTGTCAT TCACGTCACG
  ATTGTCTAGA GCATAATGGT AGTAAGGGCT AAGGGCCATT AAATCCCACT TCCATAGTTT
  M
  GGCAGTATTT TAACTAACAT GATCTGCCTG TGTGTATCGG TTTGCAAATA TTTGATTTTA
  GAATTGATAA ACTACATTTA TTTAAACTAG GTCTTGCAAA GCTCACAAAA CCTACTTTAA
  ATTTCTATGT TCACTTGTTT GATTACCTGA ATTGAGTTTT CAAAGCTTGA GACAATTTGA
  TGTATGTATG TAAGTAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383684	NES11348022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	A	C	C	A		A	A	C		C
ss324291413	CHEV_13_23843769	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29801332					SNP	C	C	C	C	A	C	A	C	C	A	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383684	NES11348022	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	244 bp distal
Gm54518	predicted gene, 54518	385 bp upstream
H2ac4	H2A clustered histone 4	302 bp downstream
H3c2	H3 clustered histone 2	445 bp upstream
Rr403663	regulatory region 403663	760 bp downstream
Rr403664	regulatory region 403664	185 bp upstream
Rr475938	regulatory region 475938	764 bp distal
Rr475939	regulatory region 475939	507 bp distal
Rr475940	regulatory region 475940	270 bp distal
Rr475941	regulatory region 475941	within coordinates
Rr475942	regulatory region 475942	1769 bp proximal
Tssr118860	transcription start site region 118860	814 bp downstream
Tssr118861	transcription start site region 118861	782 bp downstream
Tssr118862	transcription start site region 118862	693 bp downstream
Tssr118863	transcription start site region 118863	441 bp upstream
Tssr121747	transcription start site region 121747	295 bp downstream