rs29801852 SNP Detail

Summary

• ID
  rs29801852
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTGACAT CACAGACCCC
  TCTCTGGATC GGAGCCCTAT AAGGACCGAA AGCCTGCGAG TAGGTCACGT CAGAGATCCG
  ACCTGTACAC TTTACGCATA TTCCACGGGT AAAACCAGAC AATCAGTTGA CCTATTTTGT
  ACTTGATATC AACTTTGGGC TGTTATAAAC TCAAGTTTTG GGGAATATCC ACCGTTATAG
  W
  CACTAGGGAA TATATAGGTT CGTTTAAGGA TGGAGTAAAT TACAGCCATT TTACTTGAAA
  TCGTGTGTGG CTCTGAAAAG AGCCTTTGGT TAATTCCGTA GAACTGTACG GAACTGTACA
  ATTACGCCCT CTCCCCGCGG ATGCGGCGGG CCAGTTGGAT GTCCTTGGGC ATGATGGTGA
  CACGCTTGGC GTGGATGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383888	NES11347448	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A		T	T	A		A
ss324291505	CHEV_13_23853690	CHEVERUD	SCREENING_POP	f	SNP							A				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29801852					SNP	A	A	A	T	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383888	NES11347448	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Cpgi5377	CpG island 5377	1697 bp proximal
Gm61378	predicted gene, 61378	within coordinates
Gm61381	predicted gene, 61381	770 bp downstream
H1f1	H1.1 linker histone, cluster member	1845 bp upstream
H3c1	H3 clustered histone 1	64 bp downstream
H4c1	H4 clustered histone 1	572 bp upstream
Rr388132	regulatory region 388132	within coordinates
Rr403665	regulatory region 403665	1617 bp upstream
Rr475945	regulatory region 475945	363 bp distal
Rr475946	regulatory region 475946	555 bp proximal
Rr475947	regulatory region 475947	1703 bp proximal
Tssr118865	transcription start site region 118865	1839 bp upstream
Tssr121749	transcription start site region 121749	633 bp upstream
Tssr121750	transcription start site region 121750	605 bp upstream
Tssr121751	transcription start site region 121751	585 bp upstream
Tssr121752	transcription start site region 121752	541 bp downstream
Tssr121753	transcription start site region 121753	557 bp downstream
Tssr121754	transcription start site region 121754	1681 bp downstream
Tssr121755	transcription start site region 121755	1698 bp downstream