rs29802407 SNP Detail

Summary

• ID
  rs29802407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTTCATG TTTGTCATAG GTTAAATTCC TCGAATAACC
  TGAATCTCAA CTTTCTGCGT CTTTTTTTGT AGTTTCTAAG GTAGAATTAG ACAAACTCTT
  Y
  TCGGTGCTAT CGTCAATGTG GAGGATACTT GGTACGTAGC AATGATTCAA ATATTGTTTG
  GTAAACTTAT AATAGGAAAT AACTAATTCT CACAACCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383489	NES11348885	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		T	T		C
ss324291283	CHEV_13_23832673	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29802407					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383489	NES11348885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	742 bp distal
Gm60901	predicted gene, 60901	1497 bp upstream
H1f2	H1.2 linker histone, cluster member	1273 bp downstream
Rr369656	regulatory region 369656	266 bp downstream
Rr388130	regulatory region 388130	852 bp upstream
Rr475930	regulatory region 475930	1986 bp distal
Rr475931	regulatory region 475931	1618 bp distal
Rr475932	regulatory region 475932	1007 bp proximal
Rr475933	regulatory region 475933	1508 bp proximal
Tssr118854	transcription start site region 118854	1995 bp downstream
Tssr118855	transcription start site region 118855	1606 bp downstream
Tssr118856	transcription start site region 118856	869 bp downstream
Tssr118857	transcription start site region 118857	629 bp downstream
Tssr118858	transcription start site region 118858	1497 bp upstream