rs29802410 SNP Detail

Summary

• ID
  rs29802410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA CATTAAACCC TCGCCACCTC
  Y
  AGGCCTCTTC TCAAAATCTT TCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383492	NES11348501	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C		T
ss148807875	ENSMUSSNP6322968	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss324291287	CHEV_13_23832933	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29802410					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383492	NES11348501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1002 bp distal
Gm60901	predicted gene, 60901	1237 bp upstream
H1f2	H1.2 linker histone, cluster member	1533 bp downstream
Rr369656	regulatory region 369656	526 bp downstream
Rr388130	regulatory region 388130	592 bp upstream
Rr475931	regulatory region 475931	1878 bp distal
Rr475932	regulatory region 475932	747 bp proximal
Rr475933	regulatory region 475933	1248 bp proximal
Tssr118855	transcription start site region 118855	1866 bp downstream
Tssr118856	transcription start site region 118856	1129 bp downstream
Tssr118857	transcription start site region 118857	889 bp downstream
Tssr118858	transcription start site region 118858	1237 bp upstream