rs29803214 SNP Detail

Summary

• ID
  rs29803214
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23936743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGATCC GCAAGCTGCC
  GTTCCAGCGC CTGGTGCGCG AGATCGCGCA GGACTTCAAG ACCGACCTGC GCTTCCAGAG
  CTCGGCCGTC ATGGCTCTGC AGGAGGCGAG CGAGGCCTAC CTTGTGGGTC TGTTTGAGGA
  CACCAACCTG TGCGCCATCC ACGCCAAGCG TGTCACCATC ATGCCCAAGG ACATCCAGCT
  S
  GCCCGCCGCA TTCGTGGGGA GAGGGCTTAA ACGAAACAAA GTGCAAACTG GAACCCAAAG
  GCTCTTTTCA GAGCCACCCA CAGTTTCTGT AAAAGCAGCT GTTACTTTTC TACTGTCTTG
  GAAACTTTGT TTTTCAAAGA TTTATCTAGT TACAAAGTAT ACTGTTGCTT TCTTCAGTAG
  GCATCAGTTC TCACTTCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383696	NES11348032	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	G		G	G	C		C
ss324291418	CHEV_13_23844629	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29803214					SNP	C	C	C	C	G	C	G	C	C	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383696	NES11348032	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23936743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1104 bp distal
Gm54518	predicted gene, 54518	1245 bp upstream
H2ac4	H2A clustered histone 4	1162 bp downstream
H3c2	H3 clustered histone 2	Coding-Synonymous
Rr403663	regulatory region 403663	1620 bp downstream
Rr403664	regulatory region 403664	374 bp downstream
Rr475938	regulatory region 475938	1624 bp distal
Rr475939	regulatory region 475939	1367 bp distal
Rr475940	regulatory region 475940	1130 bp distal
Rr475941	regulatory region 475941	483 bp distal
Rr475942	regulatory region 475942	909 bp proximal
Tssr118860	transcription start site region 118860	1674 bp downstream
Tssr118861	transcription start site region 118861	1642 bp downstream
Tssr118862	transcription start site region 118862	1553 bp downstream
Tssr118863	transcription start site region 118863	409 bp downstream
Tssr121747	transcription start site region 121747	550 bp upstream