rs29803289 SNP Detail

Summary

• ID
  rs29803289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGTCTATAT TCGTTGTTAA GGGGACTGAA CGTGCTAGCA
  GTTATTCTAC CACTGAAATG TGTCCCTGAC AATGTATTTG AAGATATTGT TAGTATCCCA
  R
  CACTCAGAGA AAAGCTTCTT GGTATTTTTA TTGAGATTGT GTTAAAGCAC ATTTGTGGAA
  CTAGCAGTTT TCTTATGTAA AAACAAACAT GTTATCTATC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47383501	NES11348505	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29803289					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383501	NES11348505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1133 bp distal
Gm60901	predicted gene, 60901	1106 bp upstream
H1f2	H1.2 linker histone, cluster member	1664 bp downstream
Rr369656	regulatory region 369656	657 bp downstream
Rr388130	regulatory region 388130	461 bp upstream
Rr475932	regulatory region 475932	616 bp proximal
Rr475933	regulatory region 475933	1117 bp proximal
Rr475934	regulatory region 475934	1944 bp proximal
Tssr118855	transcription start site region 118855	1997 bp downstream
Tssr118856	transcription start site region 118856	1260 bp downstream
Tssr118857	transcription start site region 118857	1020 bp downstream
Tssr118858	transcription start site region 118858	1106 bp upstream