rs29804195 SNP Detail

Summary

• ID
  rs29804195
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23937062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAACTTT GTTTTTCAAA
  GATTTATCTA GTTACAAAGT ATACTGTTGC TTTCTTCAGT AGGCATCAGT TCTCACTTCA
  GTTGTTGCTG GTATTTGAGC TCATGTCCTG GAAACTGCCT TTAAATTAAA CAGTAATTTA
  CATATTACAA TAAGTGGCCA AAAGTAATGG ACTGTCAGGC TTTATGTCAT AAGCATTGCC
  W
  GTCTTGATTC CTTTTTGGTC TGTTCTTGGG TTTTGTCTTT TTTTGTTTTT GTTTTCGTGC
  TATATATTTG TGCTCTCTTG TGTAATTTCC ACTACAGGTC ATATCCAGGT GTCTTTTGTT
  CACATATTTC TGGTTCCAAC ACTTGTCTGT CCTGAAGCTT GTGCAATGTT TACTGTTTTT
  GCTGTTACTC ATTGAAATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383708	NES11348040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	T	T	A		A	A	T		T
ss324291423	CHEV_13_23844948	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29804195					SNP	T	T	T	T	A	T	A	T	T	A	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383708	NES11348040	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23937062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1423 bp distal
Gm54518	predicted gene, 54518	1564 bp upstream
H2ac4	H2A clustered histone 4	1481 bp downstream
H3c2	H3 clustered histone 2	239 bp downstream
Rr403663	regulatory region 403663	1939 bp downstream
Rr403664	regulatory region 403664	693 bp downstream
Rr475938	regulatory region 475938	1943 bp distal
Rr475939	regulatory region 475939	1686 bp distal
Rr475940	regulatory region 475940	1449 bp distal
Rr475941	regulatory region 475941	802 bp distal
Rr475942	regulatory region 475942	590 bp proximal
Tssr118860	transcription start site region 118860	1993 bp downstream
Tssr118861	transcription start site region 118861	1961 bp downstream
Tssr118862	transcription start site region 118862	1872 bp downstream
Tssr118863	transcription start site region 118863	728 bp downstream
Tssr121747	transcription start site region 121747	869 bp upstream