rs29804200 SNP Detail

Summary

• ID
  rs29804200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23937092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTAATTTA CATATTACAA TAAGTGGCCA AAAGTAATGG
  ACTGTCAGGC TTTATGTCAT AAGCATTGCC TGTCTTGATT CCTTTTTGGT CTGTTCTTGG
  R
  TTTTGTCTTT TTTTGTTTTT GTTTTCGTGC TATATATTTG TGCTCTCTTG TGTAATTTCC
  ACTACAGGTC ATATCCAGGT GTCTTTTGTT CACATATTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47383714	NES11348043	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29804200					SNP	G	G	G	G	A	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383714	NES11348043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23937092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1453 bp distal
Gm54518	predicted gene, 54518	1594 bp upstream
H2ac4	H2A clustered histone 4	1511 bp downstream
H3c2	H3 clustered histone 2	269 bp downstream
Rr403663	regulatory region 403663	1969 bp downstream
Rr403664	regulatory region 403664	723 bp downstream
Rr475938	regulatory region 475938	1973 bp distal
Rr475939	regulatory region 475939	1716 bp distal
Rr475940	regulatory region 475940	1479 bp distal
Rr475941	regulatory region 475941	832 bp distal
Rr475942	regulatory region 475942	560 bp proximal
Tssr118861	transcription start site region 118861	1991 bp downstream
Tssr118862	transcription start site region 118862	1902 bp downstream
Tssr118863	transcription start site region 118863	758 bp downstream
Tssr121747	transcription start site region 121747	899 bp upstream