rs29804203 SNP Detail

Summary

• ID
  rs29804203
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23937139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTTATGT CATAAGCATT GCCTGTCTTG ATTCCTTTTT
  GGTCTGTTCT TGGGTTTTGT CTTTTTTTGT TTTTGTTTTC GTGCTATATA TTTGTGCTCT
  S
  TTGTGTAATT TCCACTACAG GTCATATCCA GGTGTCTTTT GTTCACATAT TTCTGGTTCC
  AACACTTGTC TGTCCTGAAG CTTGTGCAAT GTTTACTGTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47383717	NES11348044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29804203					SNP	C	C	C	C	G	C	G	C	C	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383717	NES11348044	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23937139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1500 bp distal
Gm54518	predicted gene, 54518	1641 bp upstream
H2ac4	H2A clustered histone 4	1558 bp downstream
H3c2	H3 clustered histone 2	316 bp downstream
Rr403664	regulatory region 403664	770 bp downstream
Rr475939	regulatory region 475939	1763 bp distal
Rr475940	regulatory region 475940	1526 bp distal
Rr475941	regulatory region 475941	879 bp distal
Rr475942	regulatory region 475942	513 bp proximal
Tssr118862	transcription start site region 118862	1949 bp downstream
Tssr118863	transcription start site region 118863	805 bp downstream
Tssr121747	transcription start site region 121747	946 bp upstream