rs29804245 SNP Detail

Summary

• ID
  rs29804245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC CACTTAGTTA TTGAAGCCAT
  Y
  GCTGCACAAA TGAATTAAGA ATTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383507	NES11348508	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T		T	T		C
ss148807926	ENSMUSSNP3442677	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss324291295	CHEV_13_23833312	CHEVERUD	SCREENING_POP	f	SNP												T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29804245					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383507	NES11348508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1381 bp distal
Gm60901	predicted gene, 60901	858 bp upstream
H1f2	H1.2 linker histone, cluster member	1912 bp downstream
Rr369656	regulatory region 369656	905 bp downstream
Rr388130	regulatory region 388130	213 bp upstream
Rr475932	regulatory region 475932	368 bp proximal
Rr475933	regulatory region 475933	869 bp proximal
Rr475934	regulatory region 475934	1696 bp proximal
Tssr118856	transcription start site region 118856	1508 bp downstream
Tssr118857	transcription start site region 118857	1268 bp downstream
Tssr118858	transcription start site region 118858	858 bp upstream