rs29804565 SNP Detail

Summary

• ID
  rs29804565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:46655924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA GGATCTGTGA TGCGGGGATC
  Y
  GACACTGGGG CAGTCCTCAT CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss39119842	mCV24524730	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148973624	ENSMUSSNP1937098	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss324333696	CHEV_13_46597817	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29804565					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46655924 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	Intron
Cpgi5539	CpG island 5539	within coordinates
Gm35110	predicted gene, 35110	523 bp upstream
Gm61509	predicted gene, 61509	447 bp upstream
Rr478915	regulatory region 478915	590 bp distal
Rr478916	regulatory region 478916	489 bp distal
Rr478917	regulatory region 478917	272 bp distal
Rr478918	regulatory region 478918	within coordinates
Rr478919	regulatory region 478919	468 bp proximal
Tssr119597	transcription start site region 119597	563 bp downstream
Tssr119598	transcription start site region 119598	532 bp downstream
Tssr119599	transcription start site region 119599	400 bp downstream
Tssr119600	transcription start site region 119600	341 bp downstream
Tssr119601	transcription start site region 119601	308 bp downstream
Tssr119602	transcription start site region 119602	261 bp downstream
Tssr119603	transcription start site region 119603	441 bp upstream
Tssr122343	transcription start site region 122343	339 bp downstream