rs29805144 SNP Detail

Summary

• ID
  rs29805144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23926055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC TTCTGAGTTT CTCATTTCCT
  Y
  CTGGGTCCTG GTGAAATGAA CTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383516	NES11348407	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T	T		C
ss148807975	ENSMUSSNP283495	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss324291306	CHEV_13_23833941	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29805144					SNP	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383516	NES11348407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23926055 () rs orientation: forward

Symbol	Name	Function Class
Gm60901	predicted gene, 60901	229 bp upstream
Rr369656	regulatory region 369656	1534 bp downstream
Rr388130	regulatory region 388130	within coordinates
Rr475932	regulatory region 475932	within coordinates
Rr475933	regulatory region 475933	240 bp proximal
Rr475934	regulatory region 475934	1067 bp proximal
Tssr118857	transcription start site region 118857	1897 bp downstream
Tssr118858	transcription start site region 118858	229 bp upstream