rs29805150 SNP Detail

Summary

• ID
  rs29805150
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23926226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCTCT TCTGAGTTTC
  TCATTTCCTC CTGGGTCCTG GTGAAATGAA CTCTAGTTTC TGGAAATACC TCACTGACCA
  GAATTGAATC ACTTAGTAGC TACTGGGAGA TCTAATTGTG ATGCTAAATA TAGCTCAGGG
  TGTGGTGGCA GGTTTGTAAA GCTGACTCTT AGGAAGGTCA AGTAGGAGGA TCCTGGGTTG
  W
  AGACAGAGCA AAGTCTTGTC AGAAAAAACA AAAACCAAAA GAAAACCTGT TGAGTGTGGT
  GGCCTTTAAT CCTAGCACTC TGCAGGACAG GAGGGTATCT CTGAGAGTTC AAGTTCAGCC
  TTGTGTATGT AATAAGTTCC AAGGCAGCCA ATGCTATGTA GAGAGACTGT CAAAAGAAAA
  CAAAAACAAC AAACACATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383522	NES11348413	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A		A	T		T
ss324291310	CHEV_13_23834112	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29805150					SNP	T	T	T	T	T	T	T	T	A	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383522	NES11348413	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23926226 () rs orientation: forward

Symbol	Name	Function Class
Gm60901	predicted gene, 60901	58 bp upstream
Rr369656	regulatory region 369656	1705 bp downstream
Rr388130	regulatory region 388130	within coordinates
Rr475932	regulatory region 475932	within coordinates
Rr475933	regulatory region 475933	69 bp proximal
Rr475934	regulatory region 475934	896 bp proximal
Tssr118858	transcription start site region 118858	58 bp upstream