rs29806936 SNP Detail

Summary

• ID
  rs29806936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30103275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTTGCC CACTCCCTGT
  TTGGCATTCT CTGAGGACTG ACTGGAATAT AAAAGCTTCA GTTCACCTTA GTGGTTATGC
  TCTGAGTCCT TGTTTCAACA GGTACAACCT GGCTTACCAC GTGGCCCTTT AAATCGTTTC
  TAACAGTTAC ATACCTAACT GACTCATGGT TCACAGTTGT TTGTCCCTAG AAATAGGTAA
  Y
  AAATTTCCAA ACTCACGATG AATGGGCATT TTTTTTTCTG TTTCCATGAC CTTTTGGACG
  TAAGTTTATC AATGTTTTCT TTAAAATATC TCTATTTATC TTCCCATCTG CCTATCTGTC
  TGTCTGTCTC CTTATCTGTC TTGTCTGTCT GTCTACCTAT CTAATTACAA GTAAACCCTA
  AGATTTTTCA AGACCAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49571412	NES12882709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29806936					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571412	NES12882709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30103275 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	within coordinates
Rr75323	regulatory region 75323	1614 bp proximal
Rr80306	regulatory region 80306	7 bp distal
Tssr32884	transcription start site region 32884	907 bp upstream
Tssr32885	transcription start site region 32885	876 bp upstream