rs29806937 SNP Detail

Summary

• ID
  rs29806937
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30103065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTACAAG GCCCCGGATT
  CAGTCTCAGC TCCAAATTGC AAGGAAACCA TACACAGAGA GACACATACA GACACACATG
  CAGATAACAC ACTCACACAC ACACACACAC ACACCTTCCT TGCCTTATGC CCCTAAACGA
  CACACTGACA GGCAAAGGGC CAAAGAATTC TGCATGACAC TCCATGTGGT CTCTAGCATC
  K
  TATCAAGCTC TGGTTTGCCC ACTCCCTGTT TGGCATTCTC TGAGGACTGA CTGGAATATA
  AAAGCTTCAG TTCACCTTAG TGGTTATGCT CTGAGTCCTT GTTTCAACAG GTACAACCTG
  GCTTACCACG TGGCCCTTTA AATCGTTTCT AACAGTTACA TACCTAACTG ACTCATGGTT
  CACAGTTGTT TGTCCCTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49571413	NES12882708	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29806937					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571413	NES12882708	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30103065 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	within coordinates
Rr75323	regulatory region 75323	1824 bp proximal
Rr80306	regulatory region 80306	within coordinates
Tssr32884	transcription start site region 32884	697 bp upstream
Tssr32885	transcription start site region 32885	666 bp upstream