rs29808249 SNP Detail

Summary

• ID
  rs29808249
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAAGACT GCAAGCATCC
  TCTCTGGAAG GCTGGAAACC TTGGGCTCGT GGCAAATCAG CCTCTTGCCC AGTCCTGCTA
  GGCTGTATCC TTCTCCTGAC AGAGCCCTCC CAGCCTGCTT CTACTTAGGT AGTTTTGAGA
  GAATTGGGTT TTGAGCCTCC TTCTTGCTAC CTCTAAAACT GAGTTAATGC ACCTTCATCA
  S
  AGGAGGCTCC TAGAATTAAG CAAGGGAGAT TAGCTTTATA GGATGCTCAA TATATTGCCT
  GATCCATAAG AGAGTCTACA ATGGAGGACA CTTAATACAA GAGATTGAAA CCACAGAATC
  CAAAAGGCCC TTGCCACAGT TATAAGCCTC ATGGTGCGCT AGGTGAGGAG CGTGTGTAAA
  AAGGCATCCT GTTGGCTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49571525	NES12883101	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C	G	C	C	C	C	C	C	C	G
ss134728390	ENSMUSSNP5033453	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29808249					SNP	C	C	G	C	C	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571525	NES12883101	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574711	regulatory region 574711			1930 bp distal
Rr574712	regulatory region 574712			1724 bp distal
Rr574713	regulatory region 574713			1519 bp distal
Rr574714	regulatory region 574714			1314 bp distal