rs29808251 SNP Detail

Summary

• ID
  rs29808251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCTCCC TATGTATACC
  TAGATGTATA CCTAGATGTA ATTACAACAG TTTGTTTTAG CAAATTTCCT GCCTCCTTTG
  GCCTGTAACA AGAAAGAAAC GGACTGAATG TGTTAAGCTG TCACAAAGGT AAAAAGATCG
  TTTTCCTGGA GTTCTGAAGA CTGCAAGCAT CCTCTCTGGA AGGCTGGAAA CCTTGGGCTC
  R
  TGGCAAATCA GCCTCTTGCC CAGTCCTGCT AGGCTGTATC CTTCTCCTGA CAGAGCCCTC
  CCAGCCTGCT TCTACTTAGG TAGTTTTGAG AGAATTGGGT TTTGAGCCTC CTTCTTGCTA
  CCTCTAAAAC TGAGTTAATG CACCTTCATC ACAGGAGGCT CCTAGAATTA AGCAAGGGAG
  ATTAGCTTTA TAGGATGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49571527	NES12883099	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A	A	G	G	G	G	G	G	A	A
ss60382594	NES15886946	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A	A	G	G	G	G	G	G	A	A
ss134728387	ENSMUSSNP5923524	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29808251					SNP	G	G	A	G	G	G	A	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571527	NES12883099	PERLEGEN	MM_PANEL	f	SNP	A/G
ss60382594	NES15886946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086636 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1983 bp distal
Rr574711	regulatory region 574711			1778 bp distal
Rr574712	regulatory region 574712			1572 bp distal
Rr574713	regulatory region 574713			1367 bp distal
Rr574714	regulatory region 574714			1162 bp distal