rs29809193 SNP Detail

Summary

• ID
  rs29809193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31245845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGAGAGGC TATTCTCCAC
  TACTTTCTCC GACTCCCCCT TGAAGCCTGA AATGTTCCAG CTACTCTGTC ACTTGGAGTT
  AACAAGGGCC ATATGTTTAC CACCCATGGT GAGAGCAGTT TTCCCTGTCA TTCGTCCTCA
  AATTGCGTCA TGCAGGCTGT TCGCTTTACC CCATCCATCG CTCATTTGGC TGCCTCCTCT
  Y
  CTTAGGTCTT CAGTCTTTCA CAGGTGAGAG TCTCGCTAAA GAAGCCCAGT TAACCGTTTT
  GCTGACTTCC TGGGCAGGGT GGTAAGCGAA AGTCAAACAC ATCTGTCTCT AACCTATTAA
  GTGGAAACAA AAGCATTGCA GAATCTGCCT GAAGAAAACT AAACACGTTT CAATCTCATT
  TTCAAAACAC TAAACTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49572239	NES12876953	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29809193					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572239	NES12876953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31245845 () rs orientation: forward

Symbol	Name	Function Class
Rr80372	regulatory region 80372	within coordinates