rs29809278 SNP Detail

Summary

• ID
  rs29809278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31193049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACACATC TGTGCATACA
  TGAACATAAG ACGTACACAA ATACACTTAA AATAAAAATA AGAGGATATT TTACAACATA
  TCTAGTGTTT TTTTATTGGA TATATTCTTT ATTTACATTT CAAATGTTAT CCCCTTTCCT
  GGTTTCCCCT CCGAGAACTC CCTATGCCCT CCTCTCAACA TATCTAGTTC TTAATTGACC
  Y
  TTTATTGAGA TGTAAATCAC AAAACCCATT AACTGATTTT TTTTTTTTTT TTTTTTTTTT
  TACAAATTTC TTAGATAATG TTACAGAAGT TGGGTCAAAA AATATGTGTA TTTTAAATCT
  TTTGGCTCTA GCTTGTCCAA CTACTCTGGA GAAGAGTTTG CCAGGGAAGC TGGTAATATT
  TTGTTAACAC TTCTTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572334	NES12879324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809278					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572334	NES12879324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31193049 () rs orientation: forward

Symbol	Name	Function Class
Rr574889	regulatory region 574889	123 bp distal
Rr574890	regulatory region 574890	210 bp distal
Rr574891	regulatory region 574891	80 bp proximal
Rr574892	regulatory region 574892	313 bp proximal