rs29809279 SNP Detail

Summary

• ID
  rs29809279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31192578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCTGAG TTCAAGGTCA
  GCCTATTTGA CAGAGTGAGT TACTGGACCG GCAGGGCTAC CCGGAGAAAC CCCGTTTGGA
  AAAACCAATG AAACGAAACA AAACAAACAA ACAAACAACG ACAACAACAA CAAAACCCAG
  CAGCAGCAGC AACAATGGCA GTAGCAGCAA GAGAACAAAA CACCCTAATC TCACTGCTCA
  R
  AGGAACTATT TGTTAAATTG TAGTATGTAT TCTCCGAATA TGTGTCGATG GATTTTAAAA
  AGTCCCCGAT TGTACAGATG TATTGAAATT ATTTTTAGTA GTGTGCACTT TGAATATGAT
  AGTGTGGGCT GAGATAGCTC AGTGGGGAAG AGCGGCTGCT GCTGTTTCAG GCAGCAGGGT
  TCAGTTCCTT GCATTCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49572335	NES12879350	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	A	A		G
ss320694267	CHEV_3_31037351	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29809279					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572335	NES12879350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31192578 () rs orientation: forward

Symbol	Name	Function Class
Rr574889	regulatory region 574889	123 bp proximal
Rr574890	regulatory region 574890	240 bp proximal
Rr574891	regulatory region 574891	551 bp proximal
Rr574892	regulatory region 574892	784 bp proximal