rs29809281 SNP Detail

Summary

• ID
  rs29809281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31191870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACCAT GTCTACCCTA
  TTATGGAGGA AGACTGTAAC GCAGTAGGGG TGACTGTTGG GCTGGGAAGA TAGCCCAGCA
  GCAGACAACT TGCTTCTATG TCTAACCATC TAGGGTCCAT CCCTAGCTGG GGAGGGGAAT
  GATGGCTGCA TGACATCTGA GGGTATGAGT CTCTCCTAGA CTTACATGCT AACAAACATT
  R
  AACATTGTGT GTATGAATGT GTGTGTGATG TGTATATGGT GTGTGTGTAC ATGTGTGTAT
  GTAGTCTATG TGTGTGTATA TATAGTGTGT ATGTGTATAT GGTGTGTGTA AGTGATATGT
  ATGTGTGTGT ATGTATAGTC CATGTGTGTG TATATATGTG TGTACAGATA GTGTGTGTGT
  AGTGTGTATG TGTATATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572337	NES12879414	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809281					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572337	NES12879414	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31191870 () rs orientation: forward

Symbol	Name	Function Class
Rr574889	regulatory region 574889	831 bp proximal
Rr574890	regulatory region 574890	948 bp proximal
Rr574891	regulatory region 574891	1259 bp proximal
Rr574892	regulatory region 574892	1492 bp proximal