rs29809282 SNP Detail

Summary

• ID
  rs29809282
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31191123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCAGCA ACCTTGGTGA
  GGAGTGGCCC AACAGTTTAG CTGGATGACA GCCTTGGTGT GGAGTGACCC AAGAGGTCTG
  CTGGGTGACA GCCTTGGTAC AGAGTGACCC AAGAGGTCTG ATGGGTGTTG GCTGGGAGAG
  GGGTCTGCAC AACTGAATTG TTTGCAATGT TGTGTCATGA AGGCCTTCTG GGAATCTTGT
  W
  TCCTTAGGTT TTTTGTTTTT GTTTTTACCG TTGTTGTTTT GTTTTGAGAC AAGATCTTAT
  TGTATAGCTT TGGCTGGTCT CAAATTCACC CTGTCTTCAG AGCTCTGGGA TTAAACGTAT
  GTGCCACTAT GTTCTGCATA TCCTTAGTTT GTTTGTTTGT TTGTTTGTTT GTTTATTATA
  TGTAAGTACA CTGTAGCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572338	NES12879457	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809282					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572338	NES12879457	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31191123 () rs orientation: forward

Symbol	Name	Function Class
Rr574888	regulatory region 574888	1940 bp distal
Rr574889	regulatory region 574889	1578 bp proximal
Rr574890	regulatory region 574890	1695 bp proximal