rs29809283 SNP Detail

Summary

• ID
  rs29809283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31191021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGCAG CCTTGGTGAG
  GAGTGACCCA AGAGGTCGGC TGGGTGGCAG CCTTGGTGAG GTGTGACCCA AGAGGTCGGC
  TGGGTGACAC CCAAGAGGTC AGCTGGGCAG CAACCTTGGT GAGGAGTGGC CCAACAGTTT
  AGCTGGATGA CAGCCTTGGT GTGGAGTGAC CCAAGAGGTC TGCTGGGTGA CAGCCTTGGT
  R
  CAGAGTGACC CAAGAGGTCT GATGGGTGTT GGCTGGGAGA GGGGTCTGCA CAACTGAATT
  GTTTGCAATG TTGTGTCATG AAGGCCTTCT GGGAATCTTG TTTCCTTAGG TTTTTTGTTT
  TTGTTTTTAC CGTTGTTGTT TTGTTTTGAG ACAAGATCTT ATTGTATAGC TTTGGCTGGT
  CTCAAATTCA CCCTGTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572339	NES12879456	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809283					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572339	NES12879456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31191021 () rs orientation: forward

Symbol	Name	Function Class
Rr574888	regulatory region 574888	1838 bp distal
Rr574889	regulatory region 574889	1680 bp proximal
Rr574890	regulatory region 574890	1797 bp proximal