rs29809516 SNP Detail

Summary

• ID
  rs29809516
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5346839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATCTTCA TATATTTCAG
  ACATTGAAAT ATTCATGGGC AAATTTGGAG TCATTGCCAT CCTGACAAAT AAGGCATGAG
  AACATTATAA ATTTGAAACT GCAAAAAATA TCAACTGATA AAATATAATA CAATTTAAAA
  TTCAGCATTT TTTTTCTGAA CTTGCTGCGT TTAAGGTTTT CCTTTGGGCC ACTCCGCCAC
  W
  CTATCAGTAA ACAAGTTACT CTAATTCAGA AGTAATATTT AAAATTTTAC ACACACACAC
  TACAGCAATG GAAGTCATGG TGCTTGAAGT GACACCAAAA TTCAGTGGTC AAGCATGCAT
  TATTGTCAAG ATAAAGTTTT AACTTTTGTA CACAGCTAGA GAAAACATTT GCACTAAAAC
  ATATGGCCTC CTTGTCACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48388914	NES12273730	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A	A	A	A	A		T	A	A	T		A
ss325518177	CHEV_18_5346837	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29809516					SNP	T	A	T	A	A	A	A	A	A	T	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48388914	NES12273730	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5346839 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	1419 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr370337	regulatory region 370337	303 bp upstream