rs29810039 SNP Detail

Summary

• ID
  rs29810039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31244617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGTAGGG TTGATTTCTG
  GGTCTCTTTG TCTTCCCAAC TGGCATTCTT AGACCAGGAC TCTATCTGTC ATCAGCTGGA
  AATAAGGGAA GGCAGCTTTT CTGCAGGCTA AGGGCAGTGA GCTATTGCCC TGGAGAGAGG
  AAATGTACCC TCCCTACCAG TCCACACACG GGCTCTCAAG GAGTGGATGT TAGCACTCAG
  M
  TGTAGACGCC AAGGAGCTAG CTAACTAGGA GAGCATGGCG TCTCCTGTAC TAGTGCCTCT
  GCTGACTCAG CACGTTAGGT GCTGACTCAG CACGTTAGGT GCGATGAACA GTGCTTAGGC
  TGTAGGCTTG GTTTGTAAGC AAAGTATTAA AGTGAGAGTC CGTTTGAGGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572245	NES12877051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29810039					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572245	NES12877051	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31244617 () rs orientation: forward

Symbol	Name	Function Class
Rr80372	regulatory region 80372	585 bp proximal