rs29810040 SNP Detail

Summary

• ID
  rs29810040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31244530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGAGAG AGTTCCGGGA
  CAGCAGGGCT ACACAGAGAA ACCCTGCTTT AAAAAAAACA AAAACAAACA AACAAAAAAT
  TAGTTTGAGG CGTAGGGTTG ATTTCTGGGT CTCTTTGTCT TCCCAACTGG CATTCTTAGA
  CCAGGACTCT ATCTGTCATC AGCTGGAAAT AAGGGAAGGC AGCTTTTCTG CAGGCTAAGG
  R
  CAGTGAGCTA TTGCCCTGGA GAGAGGAAAT GTACCCTCCC TACCAGTCCA CACACGGGCT
  CTCAAGGAGT GGATGTTAGC ACTCAGCTGT AGACGCCAAG GAGCTAGCTA ACTAGGAGAG
  CATGGCGTCT CCTGTACTAG TGCCTCTGCT GACTCAGCAC GTTAGGTGCT GACTCAGCAC
  GTTAGGTGCG ATGAACAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49572246	NES12877046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	A	G	G		G
ss320694269	CHEV_3_31089303	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29810040					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572246	NES12877046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31244530 () rs orientation: forward

Symbol	Name	Function Class
Rr80372	regulatory region 80372	672 bp proximal