rs29810289 SNP Detail

Summary

• ID
  rs29810289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96803490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA GGAGGAGCAG AATAAATAAA
  K
  CACAAAGCAG ACATGAGACT ATTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39120357	mCV24346383	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss145024497	ENSMUSSNP485757	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss324494674	CHEV_13_97436937	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29810289					SNP	T	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96803490 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	89 bp distal
Rr281795	regulatory region 281795	110 bp proximal
Rr285480	regulatory region 285480	1913 bp distal
Rr285481	regulatory region 285481	1290 bp distal
Tssr123569	transcription start site region 123569	255 bp upstream