rs29813515 SNP Detail

Summary

• ID
  rs29813515
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121979736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GGGCATAGTT GTGCACATCT
  W
  TAATCTCAGT ATTTAGGAGA CTGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45365001	mCV24434417	ABI	CRAMUS_MOUSE	f	SNP		T	A	T
ss147410049	ENSMUSSNP5870335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320487212	CHEV_2_121974991	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29813515					SNP	T	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121979736 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	1011 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr397252	regulatory region 397252	1526 bp downstream
Tssr19804	transcription start site region 19804	1761 bp downstream
Tssr19805	transcription start site region 19805	1559 bp downstream
Tssr19806	transcription start site region 19806	1527 bp downstream
Tssr19807	transcription start site region 19807	71 bp downstream
Tssr19808	transcription start site region 19808	within coordinates
Tssr19809	transcription start site region 19809	306 bp upstream
Tssr19810	transcription start site region 19810	1307 bp upstream
Tssr19811	transcription start site region 19811	1620 bp upstream
Tssr19812	transcription start site region 19812	1655 bp upstream
Tssr19813	transcription start site region 19813	1679 bp upstream
Tssr19814	transcription start site region 19814	1702 bp upstream
Tssr19815	transcription start site region 19815	1718 bp upstream
Tssr19816	transcription start site region 19816	1734 bp upstream
Tssr19817	transcription start site region 19817	1757 bp upstream
Tssr19818	transcription start site region 19818	1780 bp upstream
Tssr19819	transcription start site region 19819	1837 bp upstream
Tssr25954	transcription start site region 25954	1735 bp upstream
Tssr25955	transcription start site region 25955	1655 bp downstream
Tssr25956	transcription start site region 25956	1732 bp downstream
Tssr25957	transcription start site region 25957	1850 bp downstream