rs29814190 SNP Detail

Summary

• ID
  rs29814190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144108214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAAACAGA ATCATCATTT CACACGGCTG CAAGCCCAGG
  TACTATGCTG AATCAAGAAA TTTTTAGTTA TCTGGACTAT TTTCAAATAA TTGCAAAATA
  Y
  TCCATTTCTC CCTTTTAGAC CTTCAATAGC TTAAGGGGGG GGGGGGGTTT CTCCTCCAGA
  GTCCCTCTAG AGTGAGTTTT GATGCCCTCT TCCTGCATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45364163	mCV22515743	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147788983	ENSMUSSNP6286703	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29814190					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144108214 () rs orientation: forward

Symbol	Name	Function Class
Rr566421	regulatory region 566421	1252 bp distal
Rr566422	regulatory region 566422	within coordinates
Rr566423	regulatory region 566423	1090 bp proximal
Snord17	small nucleolar RNA, C/D box 17	92 bp upstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	199 bp downstream
Tssr26593	transcription start site region 26593	76 bp upstream