rs29814733 SNP Detail

Summary

• ID
  rs29814733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30103478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCCAAAC TCACGATGAA
  TGGGCATTTT TTTTTCTGTT TCCATGACCT TTTGGACGTA AGTTTATCAA TGTTTTCTTT
  AAAATATCTC TATTTATCTT CCCATCTGCC TATCTGTCTG TCTGTCTCCT TATCTGTCTT
  GTCTGTCTGT CTACCTATCT AATTACAAGT AAACCCTAAG ATTTTTCAAG ACCAGGAAAA
  Y
  AGTCTTATGA ATCTTTGTTG CGGGCTCATG TTAGATACAA AATTAGCATA GGAGTAAGTT
  TTGTTCAGGT TGGCAGCCCT GCCCGGGCAC ATTTTCCTTG CATGCAGATA TAATACTCCA
  CAGACTTCAG TGAATGCGTG ACATCAAACT ACAGAAGCTA CCTTCCAGAT GATTTGGGTT
  ACTGCAATGA CTACGTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49571409	NES12882712	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29814733					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571409	NES12882712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30103478 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	within coordinates
Rr75323	regulatory region 75323	1411 bp proximal
Rr80306	regulatory region 80306	210 bp distal
Rr80307	regulatory region 80307	1913 bp proximal
Tssr32884	transcription start site region 32884	1110 bp upstream
Tssr32885	transcription start site region 32885	1079 bp upstream