rs29815689 SNP Detail

Summary

• ID
  rs29815689
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69693285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT TTTTAAAGCT AGAAATGATT
  S
  AGGGGTAGTT AAGTGGACAT TTTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45364575	mCV25170099	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss146730544	ENSMUSSNP6825616	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320332358	CHEV_2_69700998	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29815689					SNP	C	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69693285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11719	CpG island 11719			796 bp distal
Rr397022	regulatory region 397022			1278 bp downstream
Rr558483	regulatory region 558483			1369 bp distal
Rr558484	regulatory region 558484			231 bp distal
Ssb	small RNA binding exonuclease protection factor La			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr18173	transcription start site region 18173			1357 bp downstream
Tssr18174	transcription start site region 18174			1306 bp downstream
Tssr18175	transcription start site region 18175			1288 bp downstream
Tssr18176	transcription start site region 18176			763 bp downstream