rs29816196 SNP Detail

Summary

• ID
  rs29816196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30282823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGTGGG AACTGTCAAA
  CAGCGAGCCT TGGAGGGGCT CGGCCGGCGC GCGCGCCGCG CAGGCGCAGT GAGGCGGCGA
  TGAGCAGGGA GAAATTGCGA GCGGCTCGCT CGTGTGCTCT GCGGCTGCGC GGCCGAGTCG
  CTCTCCGGGG TCCCGGGGTG CTGGTGGGCT GTCCTGGGCC GGGGGAGGGT CTGGATAGGG
  Y
  GGGCGAGGAT CTGGGCCTGG ACTTTGTCCC TTGTGCCCCG CCCTCCCCCG AGCCAGAGAG
  GCCGCACTCC TGCTCGGCTG TGCAGGGAGT GACAGTTTCC TTCACTACGC TGCGGGCTGC
  TCACTGGAGA AAGCTCCCAG TTGCAGGGAG TGTGCAAACC CAGGCCAGGT TTGGGAGAAT
  TTGCGGCGCC ACGCCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45364957	mCV23155811	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146398547	ENSMUSSNP5598028	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29816196					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30282823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11435	CpG island 11435	within coordinates
Dolpp1	dolichyl pyrophosphate phosphatase 1	within coordinates
Gm75227	predicted gene, 75227	418 bp upstream
Rr396863	regulatory region 396863	324 bp downstream
Rr554304	regulatory region 554304	547 bp distal
Rr554305	regulatory region 554305	429 bp distal
Rr554306	regulatory region 554306	385 bp distal
Rr554307	regulatory region 554307	within coordinates
Tssr17111	transcription start site region 17111	506 bp downstream
Tssr17112	transcription start site region 17112	371 bp downstream
Tssr17113	transcription start site region 17113	353 bp downstream