rs29816338 SNP Detail

Summary

• ID
  rs29816338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132354950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCCCTC CCTCCCGGGA
  CTCACTTGAA GATGAGCAAA CAGCACCAAG CCAGTGAAAA CTGCTTCCAC GGCTCTGAAG
  GGAGAGGAGA GGGGATTCCT TGTGCATGGC TTACATCCCC CGTGGGCAGC CATTCTAAAG
  CACTTGCTTA GACGTGGATA ACTCACAGGC ACTTCAGGGA TGGGATGGAG GACATAAACT
  R
  GTGGGGTCAC TTTGGCCTTT ACCAGTGAAG TGGAGGCTGC AATTTCATAG CCAGACATCT
  TGACATGGGA ACCCGAGGGG AAGGGGGAAT CGTCCTCAGC GCAGCAAAGC TGAATGGAAC
  CCAGCTGTAC GTTAACGGGA GACATAAACG GCAAACTGTG CATTCATGGG GAAAAGAAAC
  GGCAAAGTGT GCGTTAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45364778	mCV22302772	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147620871	ENSMUSSNP2414808	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29816338					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132354950 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm74612	predicted gene, 74612	526 bp upstream
Rr367319	regulatory region 367319	145 bp downstream
Rr367320	regulatory region 367320	974 bp upstream
Rr565480	regulatory region 565480	537 bp distal
Rr565481	regulatory region 565481	39 bp distal
Rr565482	regulatory region 565482	57 bp proximal
Tssr26474	transcription start site region 26474	521 bp upstream
Tssr26475	transcription start site region 26475	872 bp downstream