rs29816517 SNP Detail

Summary

• ID
  rs29816517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172706165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGAAAG TTCAGCTCTC
  TTGACCCCAA GGGTCTTTCA GTCAACATTA AGAAACACCA TAAAAGCCCA ACCATGGTGG
  TACACACCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG CAGAGCTCTG TAAATTCAAG
  TCCAGCCTGG TCTACAAAGT GAGTTCTAGG CCTACACAGA GAAACCCTGT CTCAACCCCC
  Y
  ACCCCGAAAC AAATAAAAAC AAAATAAAAA ACAACTAACA ACAATGAAAA CAAACCAAAA
  AAATAGAAAA ACAAACAAAC AAAAAAAACA AAACCCATAA CCCCCCCCAA CAAAACAAAA
  CAAAACAAAA CCCTCAAAAA TCCCCATAAC CTCGGGTATG GTTGACAAGG TTTGCTGTGA
  ACGACAACAG ATGTTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45365488	mCV22950751	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148324438	ENSMUSSNP6245322	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320620580	CHEV_2_172689873	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29816517					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172706165 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	599 bp downstream
Cpgi12832	CpG island 12832	659 bp distal
Gm36254	predicted gene, 36254	1256 bp upstream
Gm56447	predicted gene, 56447	31 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	205 bp downstream
Rr374298	regulatory region 374298	744 bp upstream
Rr407149	regulatory region 407149	240 bp distal
Rr571760	regulatory region 571760	1869 bp distal
Rr571761	regulatory region 571761	308 bp distal
Rr571762	regulatory region 571762	370 bp proximal
Rr571763	regulatory region 571763	1164 bp proximal