rs29816640 SNP Detail

Summary

• ID
  rs29816640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36661629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTTTCCT CTACAATATG AGTTCTCTGA GACCTAACGA
  GGAGTGGCTG ACTGCTCAGG GAAGGAGGTC CTCTGTATCA CTGGGTCAAT GGCAGCCACA
  Y
  TGCCCTACCT GTGTTCCAGA CATGGGCGAG AGTCTCCCAA TAACACCGCC TATTCCTTCA
  TCACAGGTGG CTGCTGTTCG AGGAAAAGCT AGACATGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39617826	mCV23297221	ABI	CRAMUS_MOUSE	f	SNP	T	C	C					T		C
ss49276756	NES12727905	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T		C	C	T	C		C	T	T		C
ss146949041	ENSMUSSNP1105730	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss325584601	CHEV_18_36688230	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29816640					SNP	T	C	C	T	C	T	T	T	C	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276756	NES12727905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36661629 () rs orientation: forward

Symbol	Name	Function Class
Rr536158	regulatory region 536158	1994 bp distal
Rr536161	regulatory region 536161	409 bp distal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	within coordinates
Tssr150628	transcription start site region 150628	422 bp downstream
Tssr150629	transcription start site region 150629	629 bp upstream
Tssr150630	transcription start site region 150630	647 bp upstream
Tssr150631	transcription start site region 150631	667 bp upstream