rs29816826 SNP Detail

Summary

• ID
  rs29816826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:65495872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTCTTTTTAT AATTCGAAAA
  Y
  CCCAAAGAAA GAAATCATTG AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45366088	mCV23763844	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss146714845	ENSMUSSNP5081694	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320322021	CHEV_2_65503585	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29816826					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:65495872 () rs orientation: forward

Symbol	Name	Function Class
D2Mit90	DNA segment, Chr 2, Massachusetts Institute of Technology 90	349 bp proximal
Rr1450	regulatory region 1450	623 bp downstream
Rr558096	regulatory region 558096	741 bp distal
Rr558097	regulatory region 558097	38 bp distal
Scn2a	sodium channel, voltage-gated, type II, alpha	Intron