rs29817341 SNP Detail

Summary

• ID
  rs29817341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24780447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATCCCAGC GCTTGGGAGG CAGAGACAGG TAGAATTCTG
  AGTTCGAGGC CAGCCTGATC TACAGAGTTC CAGGACAGCA GGGCTACTTA TGCAGAGAAA
  Y
  CCTGGGGGGG GGGGGGGCTG AATAAATCTC CTATGAAAGG CAGAGAGGGA AGAACTGAAG
  AAAATATTTC TGCAAGTAAT TGATGCCCTT TGCACATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45367594	mCV22669186	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29817341					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24780447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ehmt1	euchromatic histone methyltransferase 1			Intron
				Noncoding-Transcript-Variant
Gm37139	predicted gene, 37139			within coordinates
Rr552926	regulatory region 552926			1339 bp distal
Rr552927	regulatory region 552927			91 bp proximal