rs29817895 SNP Detail

Summary

• ID
  rs29817895
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:39631485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGCAGACC AGTCACTATA AACACAAACA TCTGGTTGGG
  AATGGAGTTG GGGAGGGACT CAGAGGAATT GGGCAAGAGG AAACGATAAT CAGAATATAC
  K
  GTATACAAAT TTATTTTTAT AAAAGAAAAA AAAAACAGAG GAACAGTTTA TGCTGGGGGA
  TGGGACAGGT GCTGTCTGTC AAAGTCTAAG AAGAGCCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39617541	mCV22823681	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss146980054	ENSMUSSNP4723002	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29817895					SNP	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:39631485 () rs orientation: forward

Symbol	Name	Function Class
Nr3c1	nuclear receptor subfamily 3, group C, member 1	within coordinates
Tssr150833	transcription start site region 150833	1688 bp downstream
Tssr150834	transcription start site region 150834	1669 bp downstream
Tssr153089	transcription start site region 153089	1832 bp upstream