rs29817953 SNP Detail

Summary

• ID
  rs29817953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62310725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA CAGGTTTGCA TCTGGAGCTC
  Y
  GAAGACACAC ACGGAAGGGC TAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39619329	mCV23224892	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C
ss50422446	NES13457547	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	T	C	C	T	T		T	C	T		C
ss147265761	ENSMUSSNP5240535	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					C
ss325649278	CHEV_18_62337308	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29817953					SNP	T	T	T	C	T	T	C	C	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50422446	NES13457547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62310725 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	162 bp downstream
Cpgi10125	CpG island 10125	1312 bp proximal
Rr393783	regulatory region 393783	1945 bp upstream
Rr539062	regulatory region 539062	within coordinates
Rr539063	regulatory region 539063	1166 bp distal
Rr539064	regulatory region 539064	1237 bp proximal
Rr539065	regulatory region 539065	1348 bp proximal
Tssr153622	transcription start site region 153622	206 bp downstream