rs29818887 SNP Detail

Summary

• ID
  rs29818887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGCTT TAATTTTGGA
  GAAAGTAAAG ATAGATCTGG TTGACAATAG GTATGTTGCA GATATGGAAC AGGAAACTAA
  CTCCTCATCC ACAGGGTTTG TTTGTTTGTT GTTTGTTTGT TTGTTTGTTT GTTTGTTTTC
  TTCATCATGG TGATTTCTGC TTCTGGCGCA TTCCTTCCTG GAGCCCTCCT TAAATATTGG
  Y
  ACTAAGGCTG AATGGGCATT AGGGTTTGTA CCTTGAAGCT TTCCCTCTCG AACCATTATA
  GCTGCTCCTC TAGTGCGTCC CTTCCAAATG GAATTGTTAA GCTCATTCTC TTTGTATAAG
  CAGTAAACGC TTTGAATCTC ACATGTAGGG GCATAGAATC TTAAAGAAAT CTCTACAATG
  AGCAAGATAC TTGAAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45365127	mCV23736639	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148221264	ENSMUSSNP5983362	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29818887					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117314 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1718 bp proximal
Svs4	seminal vesicle secretory protein 4	562 bp downstream
Tssr21549	transcription start site region 21549	558 bp upstream
Tssr21550	transcription start site region 21550	664 bp upstream
Tssr21551	transcription start site region 21551	1708 bp upstream
Tssr21552	transcription start site region 21552	1752 bp upstream
Tssr27409	transcription start site region 27409	584 bp downstream
Tssr27410	transcription start site region 27410	607 bp downstream
Tssr27411	transcription start site region 27411	644 bp downstream
Tssr27412	transcription start site region 27412	682 bp downstream
Tssr27413	transcription start site region 27413	689 bp downstream
Tssr27414	transcription start site region 27414	707 bp downstream
Tssr27415	transcription start site region 27415	723 bp downstream
Tssr27416	transcription start site region 27416	1683 bp downstream
Tssr27417	transcription start site region 27417	1692 bp downstream
Tssr27418	transcription start site region 27418	1763 bp downstream
Tssr27419	transcription start site region 27419	1773 bp downstream
Tssr27420	transcription start site region 27420	1793 bp downstream
Tssr27421	transcription start site region 27421	1817 bp downstream
Tssr27422	transcription start site region 27422	1835 bp downstream
Tssr27423	transcription start site region 27423	1873 bp downstream
Tssr27424	transcription start site region 27424	1903 bp downstream
Tssr27425	transcription start site region 27425	1924 bp downstream