rs29818961 SNP Detail

Summary

• ID
  rs29818961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21371107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTA AAAACCCTGT TTAGCCCTTC
  R
  CTTGATGTTT GTCATCATGC CAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45366727	mCV25436471	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29818961					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21371107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11263	CpG island 11263	1040 bp proximal
Gm13327	predicted gene 13327	within coordinates
Gpr158	G protein-coupled receptor 158	1271 bp upstream
Rr56373	regulatory region 56373	493 bp proximal
Tssr16468	transcription start site region 16468	1236 bp upstream
Tssr16469	transcription start site region 16469	1251 bp upstream
Tssr16470	transcription start site region 16470	1271 bp upstream
Tssr16471	transcription start site region 16471	1302 bp upstream
Tssr16472	transcription start site region 16472	1525 bp upstream