rs29818979 SNP Detail

Summary

• ID
  rs29818979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173916394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGGACA TATAGATGTG
  TTTAAAATAT ATACGTTAGA AGGCTCTAAA GGCTTTAGAG ACACTGGATG GAGGACAGAC
  ATTTGGGAAC GTAAATCTCA GCTCTCCAAT ATTCGTGCAT ATATTTATAA ACCATTTATT
  CGGAGCTTGT TACAAGCCAG ATGAGATGGC AGTGGGTACA AAGATGACTA AAACACAGCC
  R
  TCCAGTCCAG CGTAGGAGGG AGATCAGGTT CTAGCCAGAA GTAAACAAGC CCCTGCTTTG
  CAGGGGGGTT GGGGGGAGGC CGATGTGTGC TCTCGAGAAT GGAGGAGAAC AGGCCCACAG
  CTCTAATCCA ATGTTCCTGC GGGAGACCGG CTCGGCGGTT GTTTACTAAC GCCGTAAGCA
  CAAAAAGGAG AAGGAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45367120	mCV24953363	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss320626944	CHEV_2_173900102	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29818979					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173916394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	408 bp proximal
Cpgi12852	CpG island 12852	1546 bp proximal
Gm75644	predicted gene, 75644	within coordinates
Rr572060	regulatory region 572060	883 bp distal
Rr572061	regulatory region 572061	within coordinates
Rr572062	regulatory region 572062	343 bp proximal
Rr572063	regulatory region 572063	1645 bp proximal
Rr572064	regulatory region 572064	1831 bp proximal
Stx16	syntaxin 16	1707 bp upstream
Tssr22077	transcription start site region 22077	1695 bp upstream