rs29819613 SNP Detail

Summary

• ID
  rs29819613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAATGAT CTTTGCCCAG
  GTGTCTCATT TTGCACGGCA GCCTGTAGGC GTGAGCCCGA GTGAAGCACA GCCTCGTCGC
  AGGGTGGAGG GCTCTTCCTC AGGGGCACCG GGTTGCTTCA CGGTGCCCTT GGGAGAATAC
  CTCAAGGGGC ACGTTGAGGA GGCCATGCAT TGATAAATCA AGAAGATGGA GTAGAGGTGA
  Y
  GTGGGACAGT GACCCACAAC ACACAAGGAA AAGGATTTTC AGTCACTCTG AGGACACTTT
  TCAAAGCCAT TGTCCTAGGA AACACTGCAG AAAAGCGGGT CACGCGCTTT ATCCACGGCG
  GACGGGGATT AAGTGAAGCA TTCTTCCCCC CTCCCCCCAT TTGTCCTTTG TTTCTCTTGC
  CATTGATTTT GGTTATGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39619349	mCV23909289	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss147616992	ENSMUSSNP856348	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29819613					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603949 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	636 bp proximal
Mbp	myelin basic protein	187 bp downstream
Rr541827	regulatory region 541827	1689 bp distal
Tssr152152	transcription start site region 152152	1699 bp downstream
Tssr152153	transcription start site region 152153	1575 bp downstream
Tssr152154	transcription start site region 152154	1552 bp downstream
Tssr152155	transcription start site region 152155	1516 bp downstream
Tssr152156	transcription start site region 152156	1447 bp downstream
Tssr152157	transcription start site region 152157	1369 bp downstream
Tssr152158	transcription start site region 152158	1332 bp downstream
Tssr152159	transcription start site region 152159	1308 bp downstream
Tssr152160	transcription start site region 152160	1262 bp downstream
Tssr152161	transcription start site region 152161	1246 bp downstream
Tssr152162	transcription start site region 152162	1225 bp downstream
Tssr152163	transcription start site region 152163	1208 bp downstream
Tssr152164	transcription start site region 152164	1163 bp downstream
Tssr152165	transcription start site region 152165	1090 bp downstream
Tssr152166	transcription start site region 152166	1054 bp downstream
Tssr152167	transcription start site region 152167	1022 bp downstream
Tssr152168	transcription start site region 152168	993 bp downstream
Tssr152169	transcription start site region 152169	940 bp downstream
Tssr152170	transcription start site region 152170	832 bp downstream
Tssr152171	transcription start site region 152171	788 bp downstream
Tssr152172	transcription start site region 152172	685 bp downstream
Tssr152173	transcription start site region 152173	670 bp downstream
Tssr152174	transcription start site region 152174	636 bp downstream
Tssr152175	transcription start site region 152175	601 bp downstream
Tssr152176	transcription start site region 152176	412 bp downstream
Tssr152177	transcription start site region 152177	232 bp downstream
Tssr154083	transcription start site region 154083	1594 bp upstream
Tssr154084	transcription start site region 154084	1540 bp upstream
Tssr154085	transcription start site region 154085	1283 bp upstream
Tssr154086	transcription start site region 154086	737 bp upstream
Tssr154087	transcription start site region 154087	516 bp upstream
Tssr154088	transcription start site region 154088	487 bp upstream
Tssr154089	transcription start site region 154089	369 bp upstream
Tssr154090	transcription start site region 154090	309 bp upstream