rs29820211 SNP Detail

Summary

• ID
  rs29820211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58010931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATT GGCTGCTGCA GTCACTGTAT
  Y
  CAGAGGACTG CATTTCCTAA CGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39617670	mCV23019644	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss325635294	CHEV_18_58037513	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29820211					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58010931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	within coordinates
Rr393751	regulatory region 393751	within coordinates
Slc12a2	solute carrier family 12, member 2	819 bp upstream
Tssr5332	transcription start site region 5332	432 bp upstream
Tssr151207	transcription start site region 151207	737 bp upstream
Tssr151208	transcription start site region 151208	761 bp upstream