rs29820454 SNP Detail

Summary

• ID
  rs29820454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122296082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCACCA ATGTGCCAGA
  GTATTTGAAT CCCCAACGTT CCAACCTCCT CCTCTTTATG ATTCTCCACA GGCAAGCAAC
  CCCACCCCAG ATTGGCTCCG AGGGGTGATT CAGTGTTGAA CTCCCACCCC GCCATGTCGG
  TCAGACTTCT GTCCCCAAGC AGCAGAGCCG GAAGGAGCTG GTGAGCCTCG CAGCGCGCAG
  Y
  AGACTGACAA AGTCCACCTT CAACTTGCGC GCGCCAACTT CACAACTTCC CTCTCCCGCC
  ACAGGGGGTC TATTTCCCCC GCCCGTTTGG CGGAAGGATC CCGCGCGCGG TGGCGGAGTC
  GCGCTCAACC GTCTCCGCCC GGGCTCCGCC CCACCCCCGC CCTACGCGCT CAAACCCCGC
  CCCTTCCCGG CGCCGGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45866406	mCV22536795	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss149186869	ENSMUSSNP5403847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321668909	CHEV_5_122608028	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29820454					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122296082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	within coordinates
Gm73495	predicted gene, 73495	within coordinates
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	259 bp upstream
Rr124301	regulatory region 124301	within coordinates
Tssr48638	transcription start site region 48638	246 bp upstream