rs29820815 SNP Detail

Summary

• ID
  rs29820815
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93643653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA CCGCACAGAC CTCCGGCTAC
  W
  TCAGTCACTT ACAAACGTGT GAGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45367139	mCV23861923	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146948935	ENSMUSSNP1501538	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss320397107	CHEV_2_93653465	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29820815					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93643653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11950	CpG island 11950			162 bp proximal
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561284	regulatory region 561284			1229 bp distal
Rr561285	regulatory region 561285			69 bp proximal
Rr561286	regulatory region 561286			239 bp proximal